MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-551-P1

Family name MIR-551 (all species)
Seed CGACCCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-551-1
Paralogues Cpi-Mir-551-P2 
Orthologues Ami-Mir-551-P1  Cfa-Mir-551-P1  Cja-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Eca-Mir-551-P1  Gja-Mir-551-P1  Hsa-Mir-551-P1  Laf-Mir-551-P1  Lch-Mir-551-P1  Loc-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Mmr-Mir-551-P1  Neu-Mir-551-P1  Pab-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Spt-Mir-551-P1  Xla-Mir-551-P1a  Xla-Mir-551-P1b  Xtr-Mir-551-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584691: 8954448-8954507 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUGGGUACUUUCCUGUAUAUGACCUUGGAAAUCAAGAAUGGGUGGAGCCUGUUGAAUUAAUUCUAGGCGACCCAUACUUGGUUUCAAGGGUCAGCAGGGAAUCUACAGAAGAAACGC
Get precursor sequence
Structure
        10        20          30        40        50        60
UUCCUGGGUACUUUCCUGUAUA--|      G         A      GGA    GUUGAA 
                        UGACCUU GAAAUCAAG AUGGGU   GCCU      U
                        ACUGGGA CUUUGGUUC UACCCA   CGGA      U
CGCAAAGAAGACAUCUAAGGGACG^      A         A      G--    UCUUAA 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-551-P1_5p*
mirBase accessionMIMAT0037903
Sequence 
0- GAAAUCAAGAAUGGGUGGAGCCU -23
Get sequence
Mature sequence

Cpi-Mir-551-P1_3p
mirBase accessionMIMAT0037904
Sequence 
39- GCGACCCAUACUUGGUUUCAA -60
Get sequence