MirGeneDB ID | Pab-Mir-551-P1 |
---|---|
Family name | MIR-551 (all species) |
Seed | CGACCCA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-551-P2 |
Orthologues | Ami-Mir-551-P1 Cfa-Mir-551-P1 Cja-Mir-551-P1 Cli-Mir-551-P1 Cmi-Mir-551-P1 Cpi-Mir-551-P1 Eca-Mir-551-P1 Gja-Mir-551-P1 Hsa-Mir-551-P1 Laf-Mir-551-P1 Lch-Mir-551-P1 Loc-Mir-551-P1 Mdo-Mir-551-P1 Mml-Mir-551-P1 Mmr-Mir-551-P1 Neu-Mir-551-P1 Pbv-Mir-551-P1 Pma-Mir-551-o1 Sha-Mir-551-P1 Spt-Mir-551-P1 Xla-Mir-551-P1a Xla-Mir-551-P1b Xtr-Mir-551-P1 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 230682469-230682528 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCUGCCAGAGGGGACUGCCGGGUGACCCUGGAAAUCCAGAGUGGGUGGGGCCUGUCUGACUGUUUCUAGGCGACCCACUCUUGGUUUCCAGGGUUGCCCUGGAAACCACAGAUGGGGAGGGet precursor sequence |
Structure | 10 20 30 40 50 60 GCUGCCAGAGGGGACUG- -| UG C GGG GUCUGA CC GGG ACCCUGGAAAUC AGAGUGGGU GCCU C GG CCC UGGGACCUUUGG UCUCACCCA CGGA U GGAGGGGUAGACACCAAA U^ GU U G-- UCUUUG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Pab-Mir-551-P1_5p* |
mirBase accession | None |
Sequence |
0- GAAAUCCAGAGUGGGUGGGGCCU -23
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|
Mature sequence | Pab-Mir-551-P1_3p |
mirBase accession | None |
Sequence |
39- GCGACCCACUCUUGGUUUCCA -60
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