MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-551-P1

Family name MIR-551 (all species)
Seed AAAUCAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-551-1
Paralogues Ami-Mir-551-P2 
Orthologues Cfa-Mir-551-P1  Cja-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Cpi-Mir-551-P1  Eca-Mir-551-P1  Gja-Mir-551-P1  Hsa-Mir-551-P1  Laf-Mir-551-P1  Lch-Mir-551-P1  Loc-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Mmr-Mir-551-P1  Neu-Mir-551-P1  Pab-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Spt-Mir-551-P1  Xla-Mir-551-P1a  Xla-Mir-551-P1b  Xtr-Mir-551-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711487.1: 2467680-2467739 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCAAGGGACACAUUUUCUGCUUUAACCUUGGAAAUCAAGGAUGGGUGAAGCCUGUUGGAAUAACUCUAGGCGACCCAUACUUGGUUUCAAGGGUCAGCAGGGAUUCUGCAGAGGAAUGAA
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Structure
        10            20        30        40        50        60
UCAAGGGACACAUUUUC----|   UUA     G         G      GAA    GUUGGA 
                     UGCU   ACCUU GAAAUCAAG AUGGGU   GCCU      A
                     ACGA   UGGGA CUUUGGUUC UACCCA   CGGA      U
AAGUAAGGAGACGUCUUAGGG^   C--     A         A      G--    UCUCAA 
.       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-551-P1_5p
mirBase accessionMIMAT0038303
Sequence 
0- GAAAUCAAGGAUGGGUGAAGCCU -23
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Co-mature sequence

Ami-Mir-551-P1_3p
mirBase accessionMIMAT0038304
Sequence 
39- GCGACCCAUACUUGGUUUCAA -60
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