MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-7398-P9d-v1

Family name MIR-7398 (all species)
Seed UGUGUAG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7398-o5  Sha-Mir-7398-o6  Sha-Mir-7398-o7  Sha-Mir-7398-o8  Sha-Mir-7398-o9  Sha-Mir-7398-o13  Sha-Mir-7398-o14  Sha-Mir-7398-P5e  Sha-Mir-7398-P5f  Sha-Mir-7398-P9d-v2  Sha-Mir-7398-P9e-v1  Sha-Mir-7398-P9e-v2  Sha-Mir-7398-P21  Sha-Mir-7398-P24c-v1  Sha-Mir-7398-P24c-v2  Sha-Mir-7398-P24d-v1  Sha-Mir-7398-P24d-v2 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)		 GL867608.1: 2081489-2081549 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCCUGUUAGCCGAUCUCCAGGUGCCCAAUUGUGUAGAGGUAAGAAAUAUGCUGUGUUCACGAUUGGUAUAUUUCUUGCCUCUACCAAUUGAGCAUCUUGGACUCUGCCACUGUCCCCUG
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Structure
        10         20         30        40        50        60
UCUCCUGUUAGCCGAUC-   -|     C      U                   UGUGUU 
                  UCC AGGUGC CAAUUG GUAGAGGUAAGAAAUAUGC      C
                  AGG UCUACG GUUAAC CAUCUCCGUUCUUUAUAUG      A
GUCCCCUGUCACCGUCUC   U^     A      -                   GUUAGC 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-7398-P9d-v1_5p
mirBase accessionNone
Sequence 
0- UUGUGUAGAGGUAAGAAAUAUGC -23
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Star sequence

Sha-Mir-7398-P9d-v1_3p*
mirBase accessionNone
Sequence 
39- AUAUUUCUUGCCUCUACCAAUU -61
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