| MirGeneDB ID | Sha-Mir-7398-P9e-v2 |
|---|
| Family name |
MIR-7398 (all species) |
|---|
| Seed |
GUGUAGA |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sha-Mir-7398-o5
Sha-Mir-7398-o6
Sha-Mir-7398-o7
Sha-Mir-7398-o8
Sha-Mir-7398-o9
Sha-Mir-7398-o13
Sha-Mir-7398-o14
Sha-Mir-7398-P5e
Sha-Mir-7398-P5f
Sha-Mir-7398-P9d-v1
Sha-Mir-7398-P9d-v2
Sha-Mir-7398-P9e-v1
Sha-Mir-7398-P21
Sha-Mir-7398-P24c-v1
Sha-Mir-7398-P24c-v2
Sha-Mir-7398-P24d-v1
Sha-Mir-7398-P24d-v2
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. harrisii
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(DEVIL_add) |
GL867608.1: 2082125-2082183 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUCCUUUUCUUUCACCUCCAGGUGCCCAAUUGUGUAGAGGUAAGAAAUAUGCUGUGUUCUUGGUUGGUAUAUUUCUUGCCUCUACCAAUUGAGCAUAUUGGACUUGGCUGCUGCCCUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCCUUUUCUUUCACCU- -| C U GUGUU
CCAG GUGC CAAUUG GUAGAGGUAAGAAAUAUGCU C
GGUU UACG GUUAAC CAUCUCCGUUCUUUAUAUGG U
UUUCCCGUCGUCGGUUCA A^ A - UUGGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Mir-7398-P9e-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGUAGAGGUAAGAAAUAUGCU -23
Get sequence
|
|---|
| Star sequence |
Sha-Mir-7398-P9e-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UAUAUUUCUUGCCUCUACCAAU -59
Get sequence
|
|---|
