MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-7398-P24c-v1

Family name MIR-7398 (all species)
Seed AUCUCAC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7398-o5  Sha-Mir-7398-o6  Sha-Mir-7398-o7  Sha-Mir-7398-o8  Sha-Mir-7398-o9  Sha-Mir-7398-o13  Sha-Mir-7398-o14  Sha-Mir-7398-P5e  Sha-Mir-7398-P5f  Sha-Mir-7398-P9d-v1  Sha-Mir-7398-P9d-v2  Sha-Mir-7398-P9e-v1  Sha-Mir-7398-P9e-v2  Sha-Mir-7398-P21  Sha-Mir-7398-P24c-v2  Sha-Mir-7398-P24d-v1  Sha-Mir-7398-P24d-v2 
Orthologues Neu-Mir-7398-P24 
Node of Origin (locus) S. harrisii
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)		 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGGGCAUUUCGCUUUCCAAAUGCCUGGCAGUGCAGAGGGUGGUGAGCAUGCUGUGGCCUCUCAAGUAUCUCACCUUUCUCUGACUGUCCAGCAUCUGGGACUCUGCUUCAACCCAGCC
Get precursor sequence
Structure
        10           20         30        40        50          
CUCGGGCAUUUCGCUUU---|  A    C   -    G       U      C    UGUGGC 
                    CCA AUGC UGG CAGU CAGAGGG GGUGAG AUGC      \
                    GGU UACG ACC GUCA GUCUCUU CCACUC UAUG      C
CCGACCCAACUUCGUCUCAG^  C    -   U    -       U      -    AACUCU 
.       110       100         90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7398-P24c-v1_5p*
mirBase accessionNone
Sequence 
0- AGUGCAGAGGGUGGUGAGCAUGC -23
Get sequence
Mature sequence

Sha-Mir-7398-P24c-v1_3p
mirBase accessionNone
Sequence 
37- UAUCUCACCUUUCUCUGACUGUC -60
Get sequence