MirGeneDB ID | Tni-Mir-455-P2-v1 |
Family name |
MIR-455 (all species) |
Seed |
AUGUGCC |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-455-P1-v1
Tni-Mir-455-P1-v2
Tni-Mir-455-P1-v3
Tni-Mir-455-P2-v2
Tni-Mir-455-P2-v3
|
Orthologues |
Dre-Mir-455-P2-v1
Dre-Mir-455-P2-v2
Dre-Mir-455-P2-v3
Gja-Mir-455
Gmo-Mir-455-P2-v1
Gmo-Mir-455-P2-v2
Gmo-Mir-455-P2-v3
Lch-Mir-455
Mal-Mir-455-P2-v1
Mal-Mir-455-P2-v2
Mal-Mir-455-P2-v3
Mun-Mir-455
Pbv-Mir-455
Pma-Mir-455
Spt-Mir-455
Xtr-Mir-455
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
Un_random: 101732509-101732566 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCUAUCUCCAGAGAUCCCUGGCGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAUGGCUUUGUUCUUCAUGGAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCUAUCUCCAGAGAUC- -| C UG G U A C UGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G G
GG ACU C UC CAUAUACGGG ACCUGA GUA C C
UUAGGUACUUCUUGUUUC U^ C GU A U C C ACGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Tni-Mir-455-P2-v1_5p |
mirBase accession | None |
Sequence |
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
|
Star sequence |
Tni-Mir-455-P2-v1_3p* |
mirBase accession | None |
Sequence |
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
|