MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-455-P1-v3

Family name MIR-455 (all species)
Seed GCAGUCC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-455
Paralogues Tni-Mir-455-P1-v1  Tni-Mir-455-P1-v2  Tni-Mir-455-P2-v1  Tni-Mir-455-P2-v2  Tni-Mir-455-P2-v3 
Orthologues Dre-Mir-455-P1-v1  Dre-Mir-455-P1-v2  Dre-Mir-455-P1-v3  Gja-Mir-455  Gmo-Mir-455-P1-v1  Gmo-Mir-455-P1-v2  Gmo-Mir-455-P1-v3  Lch-Mir-455  Mal-Mir-455-P1-v1  Mal-Mir-455-P1-v2  Mal-Mir-455-P1-v3  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 12: 4822221-4822280 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAGAUCGUCAGAGAUCCCUGAUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUUCCUCAAGGCAUGUUUCUUCAGCUCUGC
Get precursor sequence
Structure
        10          20        30        40        50         
CUGAGAUCGUCAGAGAU--| C   UGU   G          U      A   CGUGGAA 
                   CC UGA   GAG GUAUGUGCCC UGGACU CAU       G
                   GG ACU   UUC CAUAUACGGG ACCUGA GUA       C
CGUCUCGACUUCUUUGUAC^ A   CCU   A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-455-P1-v3_5p*
mirBase accessionMIMAT0003029
Sequence 
0- GUAUGUGCCCUUGGACUACAUC -22
Get sequence
Mature sequence

Tni-Mir-455-P1-v3_3p
mirBase accessionNone
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence