Mir-455-P1-v1

MirGeneDB ID

Dre-Mir-455-P1-v1

Family name

MIR-455 (all species)

Seed

AUGUGCC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-455-1

Paralogues

Dre-Mir-455-P1-v2 Dre-Mir-455-P1-v3 Dre-Mir-455-P2-v1 Dre-Mir-455-P2-v2 Dre-Mir-455-P2-v3

Orthologues

Gja-Mir-455 Gmo-Mir-455-P1-v1 Gmo-Mir-455-P1-v2 Gmo-Mir-455-P1-v3 Lch-Mir-455 Mal-Mir-455-P1-v1 Mal-Mir-455-P1-v2 Mal-Mir-455-P1-v3 Mun-Mir-455 Pbv-Mir-455 Pma-Mir-455 Spt-Mir-455 Tni-Mir-455-P1-v1 Tni-Mir-455-P1-v2 Tni-Mir-455-P1-v3 Xtr-Mir-455

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr5: 65250402-65250459 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-455-P1-v1)

Mir-455-P1-v2 chr5: 65250401-65250460 [-] UCSC Ensembl
Mir-455-P1-v3 chr5: 65250401-65250460 [-] UCSC Ensembl
Mir-455-P1-v1 chr5: 65250402-65250459 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAAUGCCCGUGUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAGAUCUUCACCGAGC

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Structure

        10          20        30        40        50        
CGAAUGCCCGUGUGAUC-  -|  U UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCC UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
CGAGCCACUUCUAGAUCC  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-455-P1-v1_5p

mirBase accession

MIMAT0001879

Sequence

0- UAUGUGCCCUUGGACUACAUCG -22

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Proposed targets

TargetScanFish: dre-miR-455

Star sequence

Dre-Mir-455-P1-v1_3p*

mirBase accession

MIMAT0031993

Sequence

36- AUGCAGUCCAUGGGCAUAUACA -58

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