MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-455-P1-v2

Family name MIR-455 (all species)
Seed CAGUCCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-455
Paralogues Gmo-Mir-455-P1-v1  Gmo-Mir-455-P1-v3  Gmo-Mir-455-P2-v1  Gmo-Mir-455-P2-v2  Gmo-Mir-455-P2-v3 
Orthologues Dre-Mir-455-P1-v1  Dre-Mir-455-P1-v2  Dre-Mir-455-P1-v3  Gja-Mir-455  Lch-Mir-455  Mal-Mir-455-P1-v1  Mal-Mir-455-P1-v2  Mal-Mir-455-P1-v3  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Tni-Mir-455-P1-v1  Tni-Mir-455-P1-v2  Tni-Mir-455-P1-v3  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3249: 210640-210699 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-P1-v2)
Mir-455-P1-v2 GeneScaffold_3249: 210640-210699 [+] UCSC Ensembl
Mir-455-P1-v3 GeneScaffold_3249: 210640-210699 [+] UCSC Ensembl
Mir-455-P1-v1 GeneScaffold_3249: 210641-210698 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGAGGUCUCCAGACAUCCCUGACGUGGGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACCUCAAGGCUUGGGUCGCCAUUACCAU
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Structure
        10          20        30        40        50         
CCGAGGUCUCCAGACAU--| C   C     G          U      A   CGUGGAA 
                   CC UGA GUGGG GUAUGUGCCC UGGACU CAU       G
                   GG ACU CAUUC CAUAUACGGG ACCUGA GUA       C
UACCAUUACCGCUGGGUUC^ A   C     A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-455-P1-v2_5p*

mirBase accessionMIMAT0044214
Sequence
0- GUAUGUGCCCUUGGACUACAU -21
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Mature sequence

Gmo-Mir-455-P1-v2_3p

mirBase accessionMIMAT0044215
Sequence
39- GCAGUCCAUGGGCAUAUACAC -60
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