Mir-455-P1-v1

MirGeneDB ID

Gmo-Mir-455-P1-v1

Family name

MIR-455 (all species)

Seed

AUGUGCC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-455

Paralogues

Gmo-Mir-455-P1-v2 Gmo-Mir-455-P1-v3 Gmo-Mir-455-P2-v1 Gmo-Mir-455-P2-v2 Gmo-Mir-455-P2-v3

Orthologues

Dre-Mir-455-P1-v1 Dre-Mir-455-P1-v2 Dre-Mir-455-P1-v3 Gja-Mir-455 Lch-Mir-455 Mal-Mir-455-P1-v1 Mal-Mir-455-P1-v2 Mal-Mir-455-P1-v3 Mun-Mir-455 Pbv-Mir-455 Pma-Mir-455 Spt-Mir-455 Tni-Mir-455-P1-v1 Tni-Mir-455-P1-v2 Tni-Mir-455-P1-v3 Xtr-Mir-455

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3249: 210641-210698 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-455-P1-v1)

Mir-455-P1-v2 GeneScaffold_3249: 210640-210699 [+] UCSC Ensembl
Mir-455-P1-v3 GeneScaffold_3249: 210640-210699 [+] UCSC Ensembl
Mir-455-P1-v1 GeneScaffold_3249: 210641-210698 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGGUCUCCAGACAUCCCUGACGUGGGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACCUCAAGGCUUGGGUCGCCAUUACCA

Get precursor sequence

Structure

        10          20        30        40        50        
CGAGGUCUCCAGACAUC-  -|  C     G          U      A   C UGGAA 
                  CC UGA GUGGG GUAUGUGCCC UGGACU CAU G     G
                  GG ACU CAUUC CAUAUACGGG ACCUGA GUA C     C
ACCAUUACCGCUGGGUUC  A^  C     A          U      C   C ACGAC 
      110       100        90        80        70        60