MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-455-P1-v1

Family name MIR-455 (all species)
Seed AUGUGCC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-455
Paralogues Tni-Mir-455-P1-v2  Tni-Mir-455-P1-v3  Tni-Mir-455-P2-v1  Tni-Mir-455-P2-v2  Tni-Mir-455-P2-v3 
Orthologues Dre-Mir-455-P1-v1  Dre-Mir-455-P1-v2  Dre-Mir-455-P1-v3  Gja-Mir-455  Gmo-Mir-455-P1-v1  Gmo-Mir-455-P1-v2  Gmo-Mir-455-P1-v3  Lch-Mir-455  Mal-Mir-455-P1-v1  Mal-Mir-455-P1-v2  Mal-Mir-455-P1-v3  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
Precursor
(pre-Mir +30nt flank)
UAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACA
Get precursor sequence
Structure
          10        20        
--|        U      A   C   GAA 
  UAUGUGCCC UGGACU CAU GUG   G
  AUAUACGGG ACCUGA GUA CAC   C
AC^        U      C   C   GAC 
       50        40        30
Deep sequencing
3' NTU No
MotifsNo
Mature sequence

Tni-Mir-455-P1-v1_5p

mirBase accessionMIMAT0003029
Sequence
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
Star sequence

Tni-Mir-455-P1-v1_3p*

mirBase accessionNone
Sequence
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence