MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-455-P2-v3

Family name MIR-455 (all species)
Seed GCAGUCC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-455-P1-v1  Tni-Mir-455-P1-v2  Tni-Mir-455-P1-v3  Tni-Mir-455-P2-v1  Tni-Mir-455-P2-v2 
Orthologues Dre-Mir-455-P2-v1  Dre-Mir-455-P2-v2  Dre-Mir-455-P2-v3  Gja-Mir-455  Gmo-Mir-455-P2-v1  Gmo-Mir-455-P2-v2  Gmo-Mir-455-P2-v3  Lch-Mir-455  Mal-Mir-455-P2-v1  Mal-Mir-455-P2-v2  Mal-Mir-455-P2-v3  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 101732508-101732567 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCUAUCUCCAGAGAUCCCUGGCGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAUGGCUUUGUUCUUCAUGGAUUC
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Structure
        10          20        30        40        50         
UGGCUAUCUCCAGAGAU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CUUAGGUACUUCUUGUUUC^ U   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-455-P2-v3_5p*
mirBase accessionNone
Sequence 
0- GUAUGUGCCCUUGGACUACAUC -22
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Mature sequence

Tni-Mir-455-P2-v3_3p
mirBase accessionNone
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
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