MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-455-P2-v3

Family name MIR-455 (all species)
Seed GCAGUCC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-455-2
Paralogues Dre-Mir-455-P1-v1  Dre-Mir-455-P1-v2  Dre-Mir-455-P1-v3  Dre-Mir-455-P2-v1  Dre-Mir-455-P2-v2 
Orthologues Gja-Mir-455  Gmo-Mir-455-P2-v1  Gmo-Mir-455-P2-v2  Gmo-Mir-455-P2-v3  Lch-Mir-455  Mal-Mir-455-P2-v1  Mal-Mir-455-P2-v2  Mal-Mir-455-P2-v3  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Tni-Mir-455-P2-v1  Tni-Mir-455-P2-v2  Tni-Mir-455-P2-v3  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr16: 51776558-51776617 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-P2-v3)		 Mir-455-P2-v2 chr16: 51776558-51776617 [+] UCSC Ensembl
Mir-455-P2-v3 chr16: 51776558-51776617 [+] UCSC Ensembl
Mir-455-P2-v1 chr16: 51776559-51776616 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUUUCCAUCGUUGUUCCCUGAAGUGAGGGUAUGUGCCCUUGGACUACAUUGUGGAGGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACUUCAUGGCCUACAUCAACACGAAGAC
Get precursor sequence
Structure
        10          20        30        40        50         
AUGUUUCCAUCGUUGUU--| C         G          U      A   UGUGGAG 
                   CC UGAAGUGAG GUAUGUGCCC UGGACU CAU       G
                   GG ACUUCAUUC CAUAUACGGG ACCUGA GUA       C
CAGAAGCACAACUACAUCC^ U         A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-455-P2-v3_5p*
mirBase accessionMIMAT0011302
Sequence 
0- GUAUGUGCCCUUGGACUACAUU -22
Get sequence
Proposed targets TargetScanFish: dre-miR-455b
Mature sequence

Dre-Mir-455-P2-v3_3p
mirBase accessionMIMAT0031993
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence