MirGeneDB ID | Xla-Mir-460-P1a |
Family name |
MIR-460 (all species) |
Seed |
CUGCAUU |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-460-P1b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
|
Orthologues |
Aca-Mir-460-P1
Ami-Mir-460-P1
Cli-Mir-460-P1
Cpi-Mir-460-P1
Dre-Mir-460-P1
Gga-Mir-460-P1
Gja-Mir-460-P1
Gmo-Mir-460-P1
Lch-Mir-460-P1
Loc-Mir-460-P1
Mal-Mir-460-P1
Mdo-Mir-460-P1
Mun-Mir-460-P1
Neu-Mir-460-P1
Oan-Mir-460-P1
Sha-Mir-460-P1
Spt-Mir-460-P1
Tgu-Mir-460-P1
Tni-Mir-460-P1
Xtr-Mir-460-P1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Osteichthyes
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030734.1: 4709482-4709540 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUCAAAUGAAACAUAUGGCUUUAUGGAGCCUGCAUUGUACACACUGUGUGUGUACCUCAGACUUGCACAGCGCAUACAAUGUGGAUGCUAUAUGAGUCACAAUCAACCUCAACACCU
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCUCAAAUGAAACAUA- -| AGC UG CACA UGUACC
UGGCUU UAUGG C CAUUGUA CUGUGUG \
ACUGAG AUAUC G GUAACAU GACACGU U
UCCACAACUCCAACUAAC U^ GUA GU ACGC UCAGAC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Xla-Mir-460-P1a_5p |
mirBase accession | None |
Sequence |
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
|
Co-mature sequence |
Xla-Mir-460-P1a_3p |
mirBase accession | None |
Sequence |
37- CACAGCGCAUACAAUGUGGAUG -59
Get sequence
|