MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-460-P1

Family name MIR-460 (all species)
Seed ACAGCGC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-460
Paralogues Tni-Mir-460-P2a  Tni-Mir-460-P2b 
Orthologues Aca-Mir-460-P1  Ami-Mir-460-P1  Cli-Mir-460-P1  Cpi-Mir-460-P1  Dre-Mir-460-P1  Gga-Mir-460-P1  Gja-Mir-460-P1  Gmo-Mir-460-P1  Lch-Mir-460-P1  Loc-Mir-460-P1  Mal-Mir-460-P1  Mdo-Mir-460-P1  Mun-Mir-460-P1  Neu-Mir-460-P1  Oan-Mir-460-P1  Sha-Mir-460-P1  Spt-Mir-460-P1  Tgu-Mir-460-P1  Xla-Mir-460-P1a  Xla-Mir-460-P1b  Xtr-Mir-460-P1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15_random: 1243748-1243806 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUACAUCAGGAAUUCGGGUUUUACAGUUCCUGCAUUGUACACACUGUGCAAAUCAAUUCUGGAAGCACAGCGCAUACAAUGUGGAUGCUGUGCUGCCCAGAUCCCACCUGUAGAAUA
Get precursor sequence
Structure
        10          20        30        40        50         
AAAUACAUCAGGAAUUC--|   UU      UC UG       CACA      AAAUCAA 
                   GGGU  UACAGU  C  CAUUGUA    CUGUGC       \
                   CCCG  GUGUCG  G  GUAACAU    GACACG       U
AUAAGAUGUCCACCCUAGA^   UC      UA GU       ACGC      AAGGUCU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-460-P1_5p*
mirBase accessionNone
Sequence 
0- CCUGCAUUGUACACACUGUGCA -22
Get sequence
Mature sequence

Tni-Mir-460-P1_3p
mirBase accessionMIMAT0002998
Sequence 
37- CACAGCGCAUACAAUGUGGAUG -59
Get sequence