MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-460-P2a

Family name MIR-460 (all species)
Seed CCUCAUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-460-P1  Tni-Mir-460-P2b 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Dre-Mir-460-P2  Gga-Mir-460-P2  Gja-Mir-460-P2  Gmo-Mir-460-P2  Lch-Mir-460-P2  Loc-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Xtr-Mir-460-P2 
Node of Origin (locus) T. nigroviridis
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 54367914-54367972 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGCCCCCCUGAACCGGUGUGCGGCGGCCUCCUCAUUGUGCAUGCUGUGUGCGCUCCUGCGUCCCACACAGCGCCUGCAAUGUGGAGGUCGAGGCACAAGCCACGCCCCGCCCACGCC
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Structure
        10          20        30        40        50         
GCGGCCCCCCUGAACCGG--|    GG        U       CA         CGCUCC 
                    UGUGC  CGGCCUCC CAUUGUG  UGCUGUGUG      \
                    ACACG  GCUGGAGG GUAACGU  GCGACACAC      U
CCGCACCCGCCCCGCACCGA^    GA        U       CC         CCUGCG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-460-P2a_5p
mirBase accessionNone
Sequence 
0- UCCUCAUUGUGCAUGCUGUGUG -22
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Star sequence

Tni-Mir-460-P2a_3p*
mirBase accessionNone
Sequence 
37- CACAGCGCCUGCAAUGUGGAGG -59
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