| MirGeneDB ID | Loc-Mir-460-P2 |
|---|
| Family name |
MIR-460 (all species) |
|---|
| Seed |
CCUCAUU |
|---|
| Species |
Spotted gar (Lepisosteus oculatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Loc-Mir-460-P1
|
|---|
| Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cli-Mir-460-P2
Cpi-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Tni-Mir-460-P2a
Tni-Mir-460-P2b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
Xtr-Mir-460-P2
|
|---|
| Node of Origin (locus) |
Osteichthyes
|
|---|
| Node of Origin (family) |
Osteichthyes
|
|---|
Genome context
(LepOcu1) |
LG7: 21682084-21682141 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAAAGAAGAAUACAUAAGGCUUCACAGUUUCCUCAUUGUACAUGCUGUGUGCCUUCUCGGUACACGCACAGCGCAUACAAUGUGGACAUUGUGGGGUUCUGUCCAGCUUUGUUCAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAAGAAGAAUACAUAA-| U U CA CCUUCU
GGCUUCACAGU UCC CAUUGUA UGCUGUGUG \
UUGGGGUGUUA AGG GUAACAU GCGACACGC C
UAACUUGUUUCGACCUGUC^ C U AC ACAUGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Loc-Mir-460-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
|---|
| Star sequence |
Loc-Mir-460-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CACAGCGCAUACAAUGUGGAC -58
Get sequence
|
|---|
