MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-460-P2

Family name MIR-460 (all species)
Seed CCUCAUU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-460-P1 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Dre-Mir-460-P2  Gga-Mir-460-P2  Gmo-Mir-460-P2  Lch-Mir-460-P2  Loc-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Tni-Mir-460-P2a  Tni-Mir-460-P2b  Xla-Mir-460-P2c  Xla-Mir-460-P2d  Xtr-Mir-460-P2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015169192.1: 1195070-1195128 [-]
Precursor
(pre-Mir +30nt flank)
CUGCUACUGCUCCUGCCUGACUCCAAAUUGCCCUCAUUGUACAUGCUGUGUGUAUUUCUGUUGGGUACACAGCGCAUGCAAUGUGGACAGGAUGGAGAUCAAGAUGCACCUGAGUCGAG
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Structure
        10         20         30        40        50         
CUGCUACUGCUCCUGCC-   -|    AA   C  U       CA         UAUUUC 
                  UGA CUCCA  UUG CC CAUUGUA  UGCUGUGUG      \
                  ACU GAGGU  GAC GG GUAACGU  GCGACACAU      U
GAGCUGAGUCCACGUAGA   A^    AG   A  U       AC         GGGUUG 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-460-P2_5p
mirBase accessionNone
Sequence 
0- CCCUCAUUGUACAUGCUGUGUG -22
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Co-mature sequence

Gja-Mir-460-P2_3p
mirBase accessionNone
Sequence 
37- CACAGCGCAUGCAAUGUGGACA -59
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