Mir-460-P1b

MirGeneDB ID

Xla-Mir-460-P1b

Family name

MIR-460 (all species)

Seed

CUGCAUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-460-P1a Xla-Mir-460-P2c Xla-Mir-460-P2d

Orthologues

Aca-Mir-460-P1 Ami-Mir-460-P1 Cli-Mir-460-P1 Cpi-Mir-460-P1 Dre-Mir-460-P1 Gga-Mir-460-P1 Gja-Mir-460-P1 Gmo-Mir-460-P1 Lch-Mir-460-P1 Loc-Mir-460-P1 Mal-Mir-460-P1 Mdo-Mir-460-P1 Mun-Mir-460-P1 Neu-Mir-460-P1 Oan-Mir-460-P1 Sha-Mir-460-P1 Spt-Mir-460-P1 Tgu-Mir-460-P1 Tni-Mir-460-P1 Xtr-Mir-460-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Osteichthyes

Genome context
(GCF_001663975.1_XLA_v2)

NC_030735.1: 3951266-3951324 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCCCAAAUGAAACACAUGGCUUUAUAGAGCCUGCAUUGUACACACUGUGUGUGUAUCUCAGACUUGCACAGCGCAUACAAUGUGGAUGCUAUAUGAGUCACAAUCAACUCCAACAUCU

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Structure

        10         20         30        40        50         
ACCCCAAAUGAAACACA-      -|    AGC UG       CACA       UGUAUC 
                  UGGCUU UAUAG   C  CAUUGUA    CUGUGUG      \
                  ACUGAG AUAUC   G  GUAACAU    GACACGU      U
UCUACAACCUCAACUAAC      U^    GUA GU       ACGC       UCAGAC 
       110       100        90        80        70        60

Deep sequencing

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-460-P1b_5p

mirBase accession

None

Sequence

0- CCUGCAUUGUACACACUGUGUG -22

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Co-mature sequence

Xla-Mir-460-P1b_3p

mirBase accession

None

Sequence

37- CACAGCGCAUACAAUGUGGAUG -59

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