MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-460-P1

Family name MIR-460 (all species)
Seed CCUGCAU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-460-P2 
Orthologues Aca-Mir-460-P1  Ami-Mir-460-P1  Cli-Mir-460-P1  Cpi-Mir-460-P1  Dre-Mir-460-P1  Gga-Mir-460-P1  Gja-Mir-460-P1  Gmo-Mir-460-P1  Lch-Mir-460-P1  Loc-Mir-460-P1  Mal-Mir-460-P1  Mdo-Mir-460-P1  Mun-Mir-460-P1  Oan-Mir-460-P1  Sha-Mir-460-P1  Tgu-Mir-460-P1  Tni-Mir-460-P1  Xla-Mir-460-P1a  Xla-Mir-460-P1b  Xtr-Mir-460-P1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01003143.1: 274334-274393 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAGAAGGGGAGAUCCCUGACUUUAUAGAACCUGCAUUGUACACACUGUGUGUAUGGUUUGGACAUGCACAGCGCAUACAAUGUGGAUACUAUAAAAGUCAAUCCAGCAUCACCCACCC
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Structure
        10        20         30        40        50          
AGCAGAAGGGGAGAUCCC    -|      AAC UG       CACA      GUAUGGU 
                  UGAC UUUAUAG   C  CAUUGUA    CUGUGU       \
                  ACUG AAAUAUC   G  GUAACAU    GACACG       U
CCCACCCACUACGACCUA    A^      AUA GU       ACGC      UACAGGU 
.       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-460-P1_5p (predicted)

mirBase accessionNone
Sequence
0- ACCUGCAUUGUACACACUGUGUG -23
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Star sequence

Spt-Mir-460-P1_3p* (predicted)

mirBase accessionNone
Sequence
38- CACAGCGCAUACAAUGUGGAUA -60
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