Mir-1175-P11

MirGeneDB ID

Ava-Mir-1175-P11

Family name

MIR-1175 (all species)

Seed

GAGAUUC

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-1175-P10

Orthologues

Aae-Mir-1175 Agr-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Eba-Mir-1175 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 War-Mir-1175

Node of Origin (locus)

A. vaga

Node of Origin (family)

Protostomia

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075495.1: 8297250-8297312 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUAUUCUCUAGUCGCAUACUCGACUCGACUAAGUGGAGCAGUUCGUCUCACCCUGAACACCAGCAAUUGGUGAGAUUCAACUCCUCCACUUCUUUGCAGUCGUUCAUAUCAACUCUUUCUUGU

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Structure

        10        20          30        40         50        60
UUAUUCUCUAGUCGCAUACU-     -   CU        C    C-|       CUGAACA 
                     CGACU CGA  AAGUGGAG AGUU  GUCUCACC       C
                     GCUGA GUU  UUCACCUC UCAA  UAGAGUGG       C
UGUUCUUUCUCAACUAUACUU     C   UC        C    CU^       UUAACGA 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Star sequence

Ava-Mir-1175-P11_5p*

mirBase accession

None

Sequence

0- AAGUGGAGCAGUUCGUCUCACC -22

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Mature sequence

Ava-Mir-1175-P11_3p

mirBase accession

None

Sequence

40- UGAGAUUCAACUCCUCCACUUCU -63

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