MirGeneDB ID | Bpl-Mir-1175 |
Family name |
MIR-1175 (all species) |
Seed |
GAGAUUC |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-1175
Asu-Mir-1175
Bge-Mir-1175
Cgi-Mir-1175
Cte-Mir-1175
Dan-Mir-1175
Dma-Mir-1175
Dme-Mir-1175
Dmo-Mir-1175
Dpu-Mir-1175
Dsi-Mir-1175
Dya-Mir-1175-P3
Dya-Mir-1175-P4
Efe-Mir-1175-P1
Efe-Mir-1175-P2
Hme-Mir-1175
Isc-Mir-1175
Lan-Mir-1175
Lgi-Mir-1175
Lpo-Mir-1175-P5
Lpo-Mir-1175-P6
Lpo-Mir-1175-P7
Npo-Mir-1175
Obi-Mir-1175
Ovu-Mir-1175
Sme-Mir-1175-P8
Sme-Mir-1175-P9
Tca-Mir-1175
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (Bpl_ASM1027981) |
QEOQ01000670.1: 513697-513772 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGAAUUUUUUUAAAAUUCGGAUCCUAGCCAAGGUGAAGUAGUAAAUCUCUUCUUGCUAAUCAAUAUGAUAAAAUCAUCAUGAUGAGAUUCAACUAACUUCACUUGAAUUAGGUCCGAUUGUUUCAACAUAAAAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGAAUUUUUUUAAAAUU--- U CCA - A-| U UUGCUAAUCAAUA
CGGA CCUAG AGGUGAAG UAGU AAUCUC UC U
GCCU GGAUU UUCACUUC AUCA UUAGAG AG G
UAGAAAAUACAACUUUGUUA - AAG A AC^ U UACUACUAAAAUA
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bpl-Mir-1175_5p* |
mirBase accession | None |
Sequence |
0- AGGUGAAGUAGUAAAUCUCUUC -22
Get sequence
|
Mature sequence |
Bpl-Mir-1175_3p |
mirBase accession | None |
Sequence |
52- UGAGAUUCAACUAACUUCACUUGA -76
Get sequence
|