Mir-1175-P4

MirGeneDB ID

Dya-Mir-1175-P4

Family name

MIR-1175 (all species)

Seed

GAGAUUC

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

Paralogues

Dya-Mir-1175-P3

Orthologues

Aae-Mir-1175 Agr-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Eba-Mir-1175 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 War-Mir-1175

Node of Origin (locus)

D. yakuba

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

3L: 23123731-23123794 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAUUUUCCACGAUCGGCGUGUCUUUGGCAAGUAGAAUAGCAGGCUUAUCACAUGUUUAACUCAAUCUGCUGUGAGAUUCUUCUAUUCUACUUUCGACAACACCCGUUAACAUCAAACCCCGAC

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Structure

        10           20        30        40        50        60  
GGAUUUUCCACGAUCGGC---|   CU    C           C   CUUA     UGUUUAAC 
                     GUGU  UUGG AAGUAGAAUAG AGG    UCACA        \
                     CACA  AGCU UUCAUCUUAUC UCU    AGUGU        U
CAGCCCCAAACUACAAUUGCC^   AC    -           U   UAG-     CGUCUAAC 
  120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

He	Wh

Star sequence

Dya-Mir-1175-P4_5p*

mirBase accession

None

Sequence

0- AGUAGAAUAGCAGGCUUAUCACA -23

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Mature sequence

Dya-Mir-1175-P4_3p

mirBase accession

None

Sequence

42- UGAGAUUCUUCUAUUCUACUUU -64

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