MirGeneDB ID | Lan-Mir-1175 |
Family name |
MIR-1175 (all species) |
Seed |
GAGAUUC |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-1175
Asu-Mir-1175
Bge-Mir-1175
Bpl-Mir-1175
Cgi-Mir-1175
Cte-Mir-1175
Dan-Mir-1175
Dma-Mir-1175
Dme-Mir-1175
Dmo-Mir-1175
Dpu-Mir-1175
Dsi-Mir-1175
Dya-Mir-1175-P3
Dya-Mir-1175-P4
Efe-Mir-1175-P1
Efe-Mir-1175-P2
Hme-Mir-1175
Isc-Mir-1175
Lgi-Mir-1175
Lpo-Mir-1175-P5
Lpo-Mir-1175-P6
Lpo-Mir-1175-P7
Npo-Mir-1175
Obi-Mir-1175
Ovu-Mir-1175
Sme-Mir-1175-P8
Sme-Mir-1175-P9
Tca-Mir-1175
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (LinAna_1.0) |
LFEI01000307: 100482-100541 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGGAUGGGAUUUCUAGUUGGUGCUGAAGCAGUGGAGAAGUUUUAUCUCAUCGUUUCACAAGGCAGGUGAGAUUCAACUCCUCCAACUGCCCAUGCAUUGAAAACUCAACAGGUGGCAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGGAUGGGAUUUCUAG-- UG UGAA -| A UU GUUUCA
U GUGC GCAG UGGAG AGUU AUCUCAUC \
A UACG CGUC ACCUC UCAA UAGAGUGG C
UAACGGUGGACAACUCAAA GU UACC A^ C CU ACGGAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lan-Mir-1175_5p* |
mirBase accession | None |
Sequence |
0- AGUGGAGAAGUUUUAUCUCAUC -22
Get sequence
|
Mature sequence |
Lan-Mir-1175_3p |
mirBase accession | None |
Sequence |
37- UGAGAUUCAACUCCUCCAACUGC -60
Get sequence
|