MirGeneDB 2.1

MirGeneDB ID

Lan-Mir-1175

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bpl-Mir-1175  Cgi-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Hme-Mir-1175  Isc-Mir-1175  Lgi-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Npo-Mir-1175  Obi-Mir-1175  Ovu-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Tca-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)
LFEI01000307: 100482-100541 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGAUGGGAUUUCUAGUUGGUGCUGAAGCAGUGGAGAAGUUUUAUCUCAUCGUUUCACAAGGCAGGUGAGAUUCAACUCCUCCAACUGCCCAUGCAUUGAAAACUCAACAGGUGGCAAU
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Structure
        10          20        30         40        50         
GAGGAUGGGAUUUCUAG-- UG    UGAA    -|    A    UU        GUUUCA 
                   U  GUGC    GCAG UGGAG AGUU  AUCUCAUC      \
                   A  UACG    CGUC ACCUC UCAA  UAGAGUGG      C
UAACGGUGGACAACUCAAA GU    UACC    A^    C    CU        ACGGAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Lan-Mir-1175_5p*

mirBase accessionNone
Sequence
0- AGUGGAGAAGUUUUAUCUCAUC -22
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Mature sequence

Lan-Mir-1175_3p

mirBase accessionNone
Sequence
37- UGAGAUUCAACUCCUCCAACUGC -60
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