Mir-1175

MirGeneDB ID

Bko-Mir-1175

Family name

MIR-1175 (all species)

Seed

GAGAUUC

Species

Monogonont Rotifer 2 (Brachionus koreanus)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-1175 Aga-Mir-1175-v1 Aga-Mir-1175-v2 Agr-Mir-1175 Asu-Mir-1175 Ava-Mir-1175-P10 Ava-Mir-1175-P11 Bge-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Dya-Mir-1175-P3 Dya-Mir-1175-P4 Eba-Mir-1175 Efe-Mir-1175-P1 Efe-Mir-1175-P2 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Lpo-Mir-1175-P5 Lpo-Mir-1175-P6 Lpo-Mir-1175-P7 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pcr-Mir-1175-P12-v1 Pcr-Mir-1175-P12-v2 Pcr-Mir-1175-P13 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sme-Mir-1175-P8 Sme-Mir-1175-P9 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 Tur-Mir-1175-v1 Tur-Mir-1175-v2 War-Mir-1175

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)

PJRA01000453.1: 780411-780485 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUAAAAAAAAAAAUAUGAAUUUUAGUUUAGGUGAAGAAGUGAAUCUUAUCUUGCUAUUUAAUAUGAUAUUUCAUCAUGGUGAGAUUCAACUAACUUCACUUGAAUUAGAUUUGUUAGUGACAUCAUAGAAAAU

Get precursor sequence

Structure

        10        20          30         40         50        60      
UGUUAAAAAAAAAAAUAUGAAU--                A-  -|          UUGCUAUUUAAUA 
                        UUUAGUUUAGGUGAAG  AG UGAAUCUUAUC             \
                        AGAUUAAGUUCACUUC  UC ACUUAGAGUGG             U
UAAAAGAUACUACAGUGAUUGUUU                AA  A^          UACUACUUUAUAG 
   130       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To	To

Star sequence

Bko-Mir-1175_5p*

mirBase accession

None

Sequence

0- AGGUGAAGAAGUGAAUCUUAUC -22

Get sequence

Mature sequence

Bko-Mir-1175_3p

mirBase accession

None

Sequence

51- UGAGAUUCAACUAACUUCACUUGA -75

Get sequence