Mir-1175-P6

MirGeneDB ID

Lpo-Mir-1175-P6

Family name

MIR-1175 (all species)

Seed

GAGAUUC

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-1175-P5 Lpo-Mir-1175-P7

Orthologues

Aae-Mir-1175 Agr-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Eba-Mir-1175 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 War-Mir-1175

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666035.1: 105989-106048 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGAAUUCAACGGGACUGUGGGGUGAGCUAGAAGUGGAGGGGUAGUCUCUUCACUUGGUUAAAAUAGUGAGAUUCAACUCCUCCAACUUGUAGCCUGUCUCACGAACCACCACUGCUUCCU

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Structure

        10          20        30         40          50        
UGAAUUCAACGGGACUG--    GU A    G   -         --|     UUCACUUGG 
                   UGGG  G GCUA AAG UGGAGGGGU  AGUCUC         \
                   ACUC  U CGAU UUC ACCUCCUCA  UUAGAG         U
UCCUUCGUCACCACCAAGC    UG C    G   A         AC^     UGAUAAAAU 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-1175-P6_5p*

mirBase accession

None

Sequence

0- AAGUGGAGGGGUAGUCUCUUC -21

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Mature sequence

Lpo-Mir-1175-P6_3p

mirBase accession

None

Sequence

36- UGAGAUUCAACUCCUCCAACUUGU -60

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