MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-1175

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-1175
Paralogues
Orthologues Aae-Mir-1175  Aga-Mir-1175-v1  Aga-Mir-1175-v2  Agr-Mir-1175  Asu-Mir-1175  Ava-Mir-1175-P10  Ava-Mir-1175-P11  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Eba-Mir-1175  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pcr-Mir-1175-P12-v1  Pcr-Mir-1175-P12-v2  Pcr-Mir-1175-P13  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Sne-Mir-1175  Snu-Mir-1175  Tur-Mir-1175-v1  Tur-Mir-1175-v2  War-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG4: 9452407-9452465 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1175)		 Mir-750 LG4: 9452255-9452313 [+] Ensembl
Mir-1175 LG4: 9452407-9452465 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGAACGCUUUGAUCGAGCUCUGUAAAGUAAGUGGAGCAGUGGUCUCUUCACUUGGUUUUUAUAGUGAGAUUCAACUCCUCCAUCUCAUUUUUUGAGCUCGUUUACAACGUUUGGGUU
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Structure
        10          20        30         40          50        
UGGGAACGCUUUGAUCG--     UGU     A  -     C   --|     UUCACUUGG 
                   AGCUC   AAAGU AG UGGAG AGU  GGUCUC         \
                   UCGAG   UUUUA UC ACCUC UCA  UUAGAG         U
UUGGGUUUGCAACAUUUGC     UU-     C  U     C   AC^     UGAUAUUUU 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-1175_5p*
mirBase accessionMIMAT0018818
Sequence 
0- AAGUGGAGCAGUGGUCUCUUCAC -23
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Mature sequence

Tca-Mir-1175_3p
mirBase accessionMIMAT0018819
Sequence 
36- UGAGAUUCAACUCCUCCAUCUCA -59
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