MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-1175

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-1175
Paralogues
Orthologues Aae-Mir-1175  Aga-Mir-1175-v1  Aga-Mir-1175-v2  Agr-Mir-1175  Asu-Mir-1175  Ava-Mir-1175-P10  Ava-Mir-1175-P11  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Eba-Mir-1175  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Gpa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pcr-Mir-1175-P12-v1  Pcr-Mir-1175-P12-v2  Pcr-Mir-1175-P13  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  Tur-Mir-1175-v1  Tur-Mir-1175-v2  War-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006953312: 24740-24805 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUAUUAUUCAGGUUUAUGAUGGGUUAUUCGUCGGAAAGUUGAAUAUCGAAUUGUUCACGAUUUCUCUUAUUUUGAGAUUCAACUUCUUCGACUGAAUAGCCCACUUUGAACAUCAGCUUGGGAAA
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Structure
        10        20          30          40        50        60 
UGUAUUAUUCAGGUUUAUGA--          -      -|        A     UUGUUCACG 
                      UGGGUUAUUC GUCGGA AAGUUGAAU UCGAA         A
                      ACCCGAUAAG CAGCUU UUCAACUUA AGUUU         U
AAAGGGUUCGACUACAAGUUUC          U      C^        G     UAUUCUCUU 
    120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Gs
Star sequence

Gsa-Mir-1175_5p*
mirBase accessionMIMAT0035254
Sequence 
0- GUCGGAAAGUUGAAUAUCGAA -21
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Mature sequence

Gsa-Mir-1175_3p
mirBase accessionMIMAT0035255
Sequence 
43- UGAGAUUCAACUUCUUCGACUGA -66
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