MirGeneDB 2.1

MirGeneDB ID

Dmo-Mir-1175

Family name MIR-1175 (all species)
Seed GUAGAAU
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bpl-Mir-1175  Cgi-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Hme-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Npo-Mir-1175  Obi-Mir-1175  Ovu-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Tca-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Dmoj_caf1)
scaffold_6680: 22084844-22084907 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGUGAUUCUCAGUCGGUGUGGAUUGGCAAGUAGAAUAGCAGGCUUAUCACAUGUACCAUUUGACCGAGUGUGAGAUUCUUCUAUUCUACUUUCGACAAGCACCAGUCAGCGUCGUUUUCGCA
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Structure
        10           20        30        40        50        60  
CCUGUGAUUCUCAGUCG---|   GGA    C           C   CUUA     UGUACCAU 
                    GUGU   UUGG AAGUAGAAUAG AGG    UCACA        \
                    CACG   AGCU UUCAUCUUAUC UCU    AGUGU        U
ACGCUUUUGCUGCGACUGAC^   AAC    -           U   UAG-     GAGCCAGU 
  120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Em Fe Ma Ma
Mature sequence

Dmo-Mir-1175_5p

mirBase accessionNone
Sequence
0- AGUAGAAUAGCAGGCUUAUCACA -23
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Star sequence

Dmo-Mir-1175_3p*

mirBase accessionNone
Sequence
42- UGAGAUUCUUCUAUUCUACUUU -64
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