Mir-1175-P8

MirGeneDB ID

Sme-Mir-1175-P8

Family name

MIR-1175 (all species)

Seed

GUGGAGA

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-1175

Paralogues

Sme-Mir-1175-P9

Orthologues

Aae-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bpl-Mir-1175 Cgi-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Hme-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ovu-Mir-1175 Tca-Mir-1175

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Protostomia

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000008_dd_Smes_g4_8: 4209507-4209570 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAAAAUUCAUUAUUAAAAUUCUAAAAUGAGUGGAGAUGUUGAAAUUCAAAAAAAUAAUUUCGUUUAUUUUGAGAUUCAACUCCUCCUACUAAUUUGGGAUUUUCAAACUUCAAGAAUUCAUG

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Structure

        10           20        30         40        50        60 
AAAAAAAUUCAUUAUUA---|         AUG   -    AU      A      AAAAUAAU 
                    AAAUUCUAAA   AGU GGAG  GUUGAA UUCAAA        \
                    UUUAGGGUUU   UCA CCUC  CAACUU GAGUUU        U
GUACUUAAGAACUUCAAACU^         AA-   U    CU      A      UAUUUGCU 
  120       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Mir-1175-P8_5p

mirBase accession

MIMAT0012147

Sequence

0- AGUGGAGAUGUUGAAAUUCAAA -22

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Star sequence

Sme-Mir-1175-P8_3p*

mirBase accession

MIMAT0011249

Sequence

41- UGAGAUUCAACUCCUCCUACUAA -64

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