MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-1175-P8

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-1175
Paralogues Sme-Mir-1175-P9 
Orthologues Aae-Mir-1175  Agr-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Eba-Mir-1175  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  War-Mir-1175 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000008_dd_Smes_g4_8: 4209507-4209570 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAAAUUCAUUAUUAAAAUUCUAAAAUGAGUGGAGAUGUUGAAAUUCAAAAAAAUAAUUUCGUUUAUUUUGAGAUUCAACUCCUCCUACUAAUUUGGGAUUUUCAAACUUCAAGAAUUCAUG
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Structure
        10           20        30         40        50        60 
AAAAAAAUUCAUUAUUA---|         AUG   -    AU      A      AAAAUAAU 
                    AAAUUCUAAA   AGU GGAG  GUUGAA UUCAAA        \
                    UUUAGGGUUU   UCA CCUC  CAACUU GAGUUU        U
GUACUUAAGAACUUCAAACU^         AA-   U    CU      A      UAUUUGCU 
  120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-1175-P8_5p*
mirBase accessionMIMAT0012147
Sequence 
0- AGUGGAGAUGUUGAAAUUCAAA -22
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Mature sequence

Sme-Mir-1175-P8_3p
mirBase accessionMIMAT0011249
Sequence 
41- UGAGAUUCAACUCCUCCUACUAA -64
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