Mir-1175

MirGeneDB ID

Asu-Mir-1175

Family name

MIR-1175 (all species)

Seed

GAGAUUC

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-1175

Paralogues

Orthologues

Aae-Mir-1175 Aga-Mir-1175-v1 Aga-Mir-1175-v2 Agr-Mir-1175 Ava-Mir-1175-P10 Ava-Mir-1175-P11 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Dya-Mir-1175-P3 Dya-Mir-1175-P4 Eba-Mir-1175 Efe-Mir-1175-P1 Efe-Mir-1175-P2 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Lpo-Mir-1175-P5 Lpo-Mir-1175-P6 Lpo-Mir-1175-P7 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pcr-Mir-1175-P12-v1 Pcr-Mir-1175-P12-v2 Pcr-Mir-1175-P13 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sme-Mir-1175-P8 Sme-Mir-1175-P9 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 Tur-Mir-1175-v1 Tur-Mir-1175-v2 War-Mir-1175

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold33: 575559-575621 [+]

Clustered miRNAs
(< 50kb from Mir-1175)

Mir-750 Scaffold33: 575078-575140 [+]
Mir-1175 Scaffold33: 575559-575621 [+]

Precursor
(pre-Mir +30nt flank)

GCGACGGCCAAUGCAUAUGGACGGUCAAAAAAGUGGAGGAUUGGGUCUGCACUGAAUGACAUGGCAUAGUGAGAUUCUCAUUCCUCCAUUUAGCUGCCUGUUCUUAUUGCUGUCAUAUGGCCA

Get precursor sequence

Structure

        10          20        30        40          50        60
GCGACGGCCAAUGCAUAU--      U  AAA          U    --|  G    GAAUGA 
                    GGACGG CA   AAGUGGAGGA UGGG  UCU CACU      C
                    CUUGUC GU   UUUACCUCCU ACUC  AGA GUGA      A
ACCGGUAUACUGUCGUUAUU      C  CGA          U    UU^  -    UACGGU 
 120       110       100        90        80         70