Mir-1175-P12-v2

MirGeneDB ID

Pcr-Mir-1175-P12-v2

Family name

MIR-1175 (all species)

Seed

GGAGAGA

Species

Tiger flatworm (Prostheceraeus crozieri )

MiRBase ID

Paralogues

Pcr-Mir-1175-P12-v1 Pcr-Mir-1175-P13

Orthologues

Aae-Mir-1175 Agr-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Eba-Mir-1175 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 War-Mir-1175

Node of Origin (locus)

P. crozeri

Node of Origin (family)

Protostomia

Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)

CAJQUW010009982.1: 245671-245730 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAUGUGGUCAGACCCGGCCUCGAAAGGCAGUGGAGAGAAAUGUAUCUCGUUCCAUUAAACAUUCUGGGAAUGAGAUUCAUCUCCUCCAACUACCGUCUGAGGAUUAAUCAACUUUCUAUG

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Structure

        10         20        30         40        50          
CAUGUGGUCAGACCCGG-     AAA  C  -|    A  A   U          AUUAAA 
                  CCUCG   GG AG UGGAG GA AUG AUCUCGUUCC      \
                  GGAGU   CC UC ACCUC CU UAC UAGAGUAAGG      C
GUAUCUUUCAACUAAUUA     CUG  A  A^    -  C   U          GUCUUA 
.       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Pcr-Mir-1175-P12-v2_5p

mirBase accession

None

Sequence

0- UGGAGAGAAAUGUAUCUCGUUCC -23

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Star sequence

Pcr-Mir-1175-P12-v2_3p*

mirBase accession

None

Sequence

38- AAUGAGAUUCAUCUCCUCCAAC -60

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