Mir-1175-P13

MirGeneDB ID

Pcr-Mir-1175-P13

Family name

MIR-1175 (all species)

Seed

GAGAUUC

Species

Tiger flatworm (Prostheceraeus crozieri )

MiRBase ID

Paralogues

Pcr-Mir-1175-P12-v1 Pcr-Mir-1175-P12-v2

Orthologues

Aae-Mir-1175 Agr-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Eba-Mir-1175 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 War-Mir-1175

Node of Origin (locus)

P. crozeri

Node of Origin (family)

Protostomia

Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)

CAJQUW010014532.1: 635749-635807 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAAUGUAAUGAAUGCGACUUUCAUUGGAAGUGGAGAGAGUUGUAUCUCUUACAGAAAUUUAUGAUGAGAUUCAUCUCCUCCAACUGCCAUAGAAAGUAUGAUCGACCAUGAAAUUUC

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Structure

        10          20        30         40        50         
AGAAAUGUAAUGAAUGCG--      AU   A  -|    A   U  U     UUACAGAA 
                    ACUUUC  UGG AG UGGAG GAG UG AUCUC        \
                    UGAAAG  ACC UC ACCUC CUC AC UAGAG        A
CUUUAAAGUACCAGCUAGUA      AU   G  A^    -   U  U     UAGUAUUU 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pcr-Mir-1175-P13_5p*

mirBase accession

None

Sequence

0- AGUGGAGAGAGUUGUAUCUCUUA -23

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Mature sequence

Pcr-Mir-1175-P13_3p

mirBase accession

None

Sequence

36- UGAGAUUCAUCUCCUCCAACUGC -59

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