MirGeneDB 2.1

MirGeneDB ID

Ovu-Mir-1175

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bpl-Mir-1175  Cgi-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Hme-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Npo-Mir-1175  Obi-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Tca-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01053459.1: 2256-2316 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUGUCUCUUUACCCUUGAUGUUGUUCACAGUGGAGAAAGUUUUAUCUUACUUUAAAUUUUACUCAGUGAGAUUCAACUUCUCCAACUGCAAACUUCAUCAAUCUCUCGGACUUUCAAUG
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Structure
        10          20        30         40        50          
CAGUGUCUCUUUACCCU--     UU   CA   -|      A   UU        UUAAAU 
                   UGAUG  GUU  CAG UGGAGAA GUU  AUCUUACU      \
                   ACUAC  CAA  GUC ACCUCUU CAA  UAGAGUGA      U
GUAACUUUCAGGCUCUCUA     UU   AC   A^      -   CU        CUCAUU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ne Ne Ne Ne Ne Ne Ne Ne Ne No No No No No No No No No
Star sequence

Ovu-Mir-1175_5p*

mirBase accessionNone
Sequence
0- AGUGGAGAAAGUUUUAUCUUACU -23
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Mature sequence

Ovu-Mir-1175_3p

mirBase accessionNone
Sequence
38- UGAGAUUCAACUUCUCCAACUGC -61
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