MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-1175-P9

Family name MIR-1175 (all species)
Seed GUGGAGC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-755
Paralogues Sme-Mir-1175-P8 
Orthologues Aae-Mir-1175  Agr-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Eba-Mir-1175  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  War-Mir-1175 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000064_dd_Smes_g4_64: 240466-240524 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1175-P9)		 Mir-1175-P9 NNSW01000064_dd_Smes_g4_64: 240466-240524 [-] UCSC Ensembl
Mir-750 NNSW01000064_dd_Smes_g4_64: 240588-240657 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAAAGAAUCUGUUGCCACACUUUUCUGUAGUGGAGCUAUUGUAUUUCACCGUGGUUGGCUAUCGUGAGAUUCAAUUACUCCAACUACGAUUUAGUGGCAAAUCUUCAUAAUGGGGAU
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Structure
        10          20         30         40        50        
UUUAAAGAAUCUGUUGCCA--    UU-| U     -    CU    U       CGUGGU 
                     CACU   UC GUAGU GGAG  AUUG AUUUCAC      U
                     GUGA   AG CAUCA CCUC  UAAC UAGAGUG      G
UAGGGGUAAUACUUCUAAACG    UUU^ -     A    AU    U       CUAUCG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-1175-P9_5p
mirBase accessionMIMAT0004022
Sequence 
0- AGUGGAGCUAUUGUAUUUCACC -22
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Co-mature sequence

Sme-Mir-1175-P9_3p
mirBase accessionMIMAT0012126
Sequence 
36- UGAGAUUCAAUUACUCCAACUAC -59
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