MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1175

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1175  Aga-Mir-1175-v1  Aga-Mir-1175-v2  Agr-Mir-1175  Asu-Mir-1175  Ava-Mir-1175-P10  Ava-Mir-1175-P11  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Eba-Mir-1175  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pcr-Mir-1175-P12-v1  Pcr-Mir-1175-P12-v2  Pcr-Mir-1175-P13  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  Tur-Mir-1175-v1  Tur-Mir-1175-v2  War-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 113487498-113487560 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAGUUGGAUGAUCUGCGUCGGUGGGUGCAGUGGAGAGAGUUCUAUCUCAUCGUCUCAGUUCAAUCUGGUGAGAUUCAACUCCUCCAACUGCAUGGCCGAGGCACUGCGUCUAGUGACUUCA
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Structure
        10           20        30         40        50        60 
GAGAGUUGGAUGAUCUG---|G     GG       -    A     CU        GUCUCAG 
                    C UCGGU  GUGCAGU GGAG GAGUU  AUCUCAUC       \
                    G AGCCG  UACGUCA CCUC CUCAA  UAGAGUGG       U
ACUUCAGUGAUCUGCGUCAC^G     G-       A    -     CU        UCUAACU 
 120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-1175_5p*
mirBase accessionNone
Sequence 
0- AGUGGAGAGAGUUCUAUCUCAUC -23
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Mature sequence

Pdu-Mir-1175_3p
mirBase accessionNone
Sequence 
40- UGAGAUUCAACUCCUCCAACUGC -63
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