MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-1175-v1

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues Tur-Mir-1175-v2 
Orthologues Aae-Mir-1175  Aga-Mir-1175-v1  Agr-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Eba-Mir-1175  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  War-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587319.1: 654009-654071 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUUUUAUUGUUAUAAUCGGUGAGAGUCAAGGUGGAGAAGUAGUCUCUUCACUUUGAAUAAUGGUAAGUGAGAUUCAACUCCUCCAACUUAUUUUCUCACUGAUAAAUCAUCUUUAACCCGA
Get precursor sequence
Structure
        10          20         30        40          50         
AUAUUUUAUUGUUAUAA--          UC-   G     A   --|     UUCACUUUGA 
                   UCGGUGAGAG   AAG UGGAG AGU  AGUCUC          A
                   AGUCACUCUU   UUC ACCUC UCA  UUAGAG          U
AGCCCAAUUUCUACUAAAU          UUA   A     C   AC^     UGAAUGGUAA 
 120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr
Star sequence

Tur-Mir-1175-v1_5p*
mirBase accessionNone
Sequence 
0- AGGUGGAGAAGUAGUCUCUUCACU -24
Get sequence
Mature sequence

Tur-Mir-1175-v1_3p
mirBase accessionNone
Sequence 
39- UGAGAUUCAACUCCUCCAACUUAU -63
Get sequence