MirGeneDB ID | Tur-Mir-1175-v2 |
Family name |
MIR-1175 (all species) |
Seed |
GGAGAAG |
Species |
Two-spotted spider mite (Tetranychus urticae) |
MiRBase ID |
|
Paralogues |
Tur-Mir-1175-v1
|
Orthologues |
Aae-Mir-1175
Aga-Mir-1175-v2
Agr-Mir-1175
Asu-Mir-1175
Bge-Mir-1175
Bko-Mir-1175
Bpl-Mir-1175
Cte-Mir-1175
Dan-Mir-1175
Dgr-Mir-1175
Dlo-Mir-1175
Dma-Mir-1175
Dme-Mir-1175
Dmo-Mir-1175
Dpu-Mir-1175
Dsi-Mir-1175
Eba-Mir-1175
Gpa-Mir-1175
Gsa-Mir-1175
Gsp-Mir-1175
Hme-Mir-1175
Hru-Mir-1175
Isc-Mir-1175
Lan-Mir-1175
Lgi-Mir-1175
Llo-Mir-1175
Mgi-Mir-1175
Mom-Mir-1175
Npo-Mir-1175
Obi-Mir-1175
Ofu-Mir-1175
Ovu-Mir-1175
Pau-Mir-1175
Pca-Mir-1175
Pdu-Mir-1175
Pve-Mir-1175
Rph-Mir-1175
Sma-Mir-1175
Sne-Mir-1175
Snu-Mir-1175
Tca-Mir-1175
War-Mir-1175
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587319.1: 654012-654068 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUAUUGUUAUAAUCGGUGAGAGUCAAGGUGGAGAAGUAGUCUCUUCACUUUGAAUAAUGGUAAGUGAGAUUCAACUCCUCCAACUUAUUUUCUCACUGAUAAAUCAUCUUUAACC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUUAUUGUUAUAAUCG-- UC- G A --| UUCACUUUGA
GUGAGAG AAG UGGAG AGU AGUCUC A
CACUCUU UUC ACCUC UCA UUAGAG U
CCAAUUUCUACUAAAUAGU UUA A C AC^ UGAAUGGUAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Tur-Mir-1175-v2_5p |
mirBase accession | None |
Sequence |
0- UGGAGAAGUAGUCUCUUCACU -21
Get sequence
|
Star sequence |
Tur-Mir-1175-v2_3p* |
mirBase accession | None |
Sequence |
36- UGAGAUUCAACUCCUCCAACU -57
Get sequence
|