MirGeneDB ID | Cfa-Mir-1912 |
Family name |
MIR-1912 (all species) |
Seed |
ACCCAGA |
Species |
Dog (Canis familiaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-1912
Cja-Mir-1912
Cpo-Mir-1912
Eca-Mir-1912
Ete-Mir-1912
Hsa-Mir-1912
Laf-Mir-1912
Mml-Mir-1912
Mmr-Mir-1912
Mmu-Mir-1912
Ocu-Mir-1912
Pab-Mir-1912
Rno-Mir-1912
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (canFam3_add) |
chrX: 87400543-87400597 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUCACAAGAGGACUUGGCUCUAGGAUGUGCUCAUUGCAUGAGCUGUGUAUAUUUUUAUUCAAUACCCAGAGCGUGCAGUGUGAACAUAAUAGAGAUUGAAAGACAGCCAGAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUCACAAGAGGACUUGG--| GG GCU AG U AUUUU
CUCUA AUGU CAUUGCAUG CUG GUAU \
GAGAU UACA GUGACGUGC GAC CAUA U
GGAAGACCGACAGAAAGUUA^ AA AGU GA C ACUUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Star sequence |
Cfa-Mir-1912_5p* |
mirBase accession | None |
Sequence |
0- CUCAUUGCAUGAGCUGUGUAUA -22
Get sequence
|
Mature sequence |
Cfa-Mir-1912_3p |
mirBase accession | None |
Sequence |
33- UACCCAGAGCGUGCAGUGUGAA -55
Get sequence
|