MirGeneDB ID | Cja-Mir-1912 |
Family name |
MIR-1912 (all species) |
Seed |
ACCCAGA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1912
Cfa-Mir-1912
Cpo-Mir-1912
Eca-Mir-1912
Ete-Mir-1912
Hsa-Mir-1912
Laf-Mir-1912
Mml-Mir-1912
Mmr-Mir-1912
Mmu-Mir-1912
Ocu-Mir-1912
Pab-Mir-1912
Rno-Mir-1912
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 106961435-106961489 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUCACAACUGGACUUGGCUCUAGGAUGUGCUCAUUGCAUGAGCUGCGUACAUUAUUAUUCAAUACCCAGAACAUGCGGUGUGAACAUAAUAGAGAUUGAAAAACAUCCAGAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUCACAACUGGACUUGG--| GG GCU AG C CAUUAU
CUCUA AUGU CAUUGCAUG CUG GUA \
GAGAU UACA GUGGCGUAC GAC CAU U
AGAAGACCUACAAAAAGUUA^ AA AGU AA C AACUUA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cja-Mir-1912_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CUCAUUGCAUGAGCUGCGUACA -22
Get sequence
|
Mature sequence |
Cja-Mir-1912_3p (predicted) |
mirBase accession | None |
Sequence |
33- UACCCAGAACAUGCGGUGUGAA -55
Get sequence
|