MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-1912

Family name MIR-1912 (all species)
Seed ACCCAGA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1912  Cfa-Mir-1912  Cja-Mir-1912  Cpo-Mir-1912  Eca-Mir-1912  Ete-Mir-1912  Hsa-Mir-1912  Laf-Mir-1912  Mml-Mir-1912  Mmr-Mir-1912  Mmu-Mir-1912  Pab-Mir-1912  Rno-Mir-1912 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrX: 63087552-63087607 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCACAGCUGGACUUGGCUCUAGGAUGUGCUCAUUGCAUGGGCUGUGUAUAUUUUUUAUUCAAUACCCAGAGCAUGCAGUGUGAACAUAAUAGAGAUUAAAAGGCAGUCAGAAGA
Get precursor sequence
Structure
        10          20        30        40        50       
UAUCACAGCUGGACUUGG--|    GG    GCU         GG   U    AUUUU 
                    CUCUA  AUGU   CAUUGCAUG  CUG GUAU     U
                    GAGAU  UACA   GUGACGUAC  GAC CAUA     U
AGAAGACUGACGGAAAAUUA^    AA    AGU         GA   C    ACUUA 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-1912_5p*

mirBase accessionNone
Sequence
0- CUCAUUGCAUGGGCUGUGUAUA -22
Get sequence
Mature sequence

Ocu-Mir-1912_3p

mirBase accessionNone
Sequence
34- UACCCAGAGCAUGCAGUGUGAA -56
Get sequence