MirGeneDB ID | Ete-Mir-1912 |
Family name |
MIR-1912 (all species) |
Seed |
ACCCAGA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1912
Cfa-Mir-1912
Cja-Mir-1912
Cpo-Mir-1912
Eca-Mir-1912
Hsa-Mir-1912
Laf-Mir-1912
Mml-Mir-1912
Mmr-Mir-1912
Mmu-Mir-1912
Ocu-Mir-1912
Pab-Mir-1912
Rno-Mir-1912
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980336: 11900400-11900454 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UAUCACAACUGGACUUAGCUCUAGGAUGUACUCAUUGCAUGGGCUGUGUAUAUUUUUAUUUAAUACCCAGAGCAUGCAUUGUGGACAUAAUAGAGAUUGAAAGACAGCCAGAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUCACAACUGGACUUAG--| GG ACU U GG U AUUUU
CUCUA AUGU CA UGCAUG CUG GUAU \
GAGAU UACA GU ACGUAC GAC CAUA U
GGAAGACCGACAGAAAGUUA^ AA GGU U GA C AUUUA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Ete-Mir-1912_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CUCAUUGCAUGGGCUGUGUAUA -22
Get sequence
|
Mature sequence |
Ete-Mir-1912_3p (predicted) |
mirBase accession | None |
Sequence |
33- UACCCAGAGCAUGCAUUGUGGA -55
Get sequence
|