MirGeneDB ID | Laf-Mir-1912 |
Family name |
MIR-1912 (all species) |
Seed |
ACCCAGA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1912
Cfa-Mir-1912
Cja-Mir-1912
Cpo-Mir-1912
Eca-Mir-1912
Ete-Mir-1912
Hsa-Mir-1912
Mml-Mir-1912
Mmr-Mir-1912
Mmu-Mir-1912
Ocu-Mir-1912
Pab-Mir-1912
Rno-Mir-1912
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010059.1: 16567887-16567941 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUCACAAGUGGACUUGGCUCUAGGAUGUGCUCAUUGCAUGGGCUGUGUAUAUUUUCAUUUAAUACCCAGAGCAUGCAGUGUGAACAUAAUAGAGAUUGAAAGACAGACAGAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUCACAAGUGGACUUGG--| GG GCU GG U AUUUU
CUCUA AUGU CAUUGCAUG CUG GUAU \
GAGAU UACA GUGACGUAC GAC CAUA C
GGAAGACAGACAGAAAGUUA^ AA AGU GA C AUUUA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Laf-Mir-1912_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CUCAUUGCAUGGGCUGUGUAUA -22
Get sequence
|
Mature sequence |
Laf-Mir-1912_3p (predicted) |
mirBase accession | None |
Sequence |
33- UACCCAGAGCAUGCAGUGUGAA -55
Get sequence
|