MirGeneDB ID | Cpo-Mir-1912 |
Family name |
MIR-1912 (all species) |
Seed |
ACCCAGA |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1912
Cfa-Mir-1912
Cja-Mir-1912
Eca-Mir-1912
Ete-Mir-1912
Hsa-Mir-1912
Laf-Mir-1912
Mml-Mir-1912
Mmr-Mir-1912
Mmu-Mir-1912
Ocu-Mir-1912
Pab-Mir-1912
Rno-Mir-1912
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_46: 5271936-5271990 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UAUCACCUCUGGACUUGGCUCUAGGAUGUGCUCAUUGCAUGAACUGUGUAUAUUUUUAUUCGAUACCCAGAGCAUGCAGUGUGAACAUAAUAGAGAUGGAAAGACAGCCAGAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUCACCUCUGGACUUGG--| GG GCU AA U AUUUU
CUCUA AUGU CAUUGCAUG CUG GUAU \
GAGAU UACA GUGACGUAC GAC CAUA U
GGAAGACCGACAGAAAGGUA^ AA AGU GA C GCUUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Star sequence |
Cpo-Mir-1912_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CUCAUUGCAUGAACUGUGUAUA -22
Get sequence
|
Mature sequence |
Cpo-Mir-1912_3p |
mirBase accession | None |
Sequence |
33- UACCCAGAGCAUGCAGUGUGAA -55
Get sequence
|