MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-506-P4

Family name MIR-506 (all species)
Seed GAAUGGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-506
Paralogues Cfa-Mir-506-P1  Cfa-Mir-506-P2a  Cfa-Mir-506-P2b  Cfa-Mir-506-P3a  Cfa-Mir-506-P3b 
Orthologues Bta-Mir-506-P4  Cja-Mir-506-P4  Cpo-Mir-506-P4  Dno-Mir-506-P4  Eca-Mir-506-P4a  Eca-Mir-506-P4b  Hsa-Mir-506-P4  Laf-Mir-506  Mml-Mir-506-P4  Mmr-Mir-506-P4  Mmu-Mir-506-P4  Ocu-Mir-506-P4  Pab-Mir-506-P4  Rno-Mir-506-P4 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 115652425-115652482 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P4)		 Mir-506-P4 chrX: 115652425-115652482 [-] UCSC Ensembl
Mir-506-P2b chrX: 115652721-115652779 [-] UCSC Ensembl
Mir-506-P3a chrX: 115658398-115658456 [-] UCSC Ensembl
Mir-506-P3b chrX: 115658609-115658666 [-] UCSC Ensembl
Mir-506-P2a chrX: 115665393-115665450 [-] UCSC Ensembl
Mir-506-P1 chrX: 115688019-115688076 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCUUCGGCUUAUCUGUGUUCAGUGCCCUACUCAGGGAGGCGUCAUUCACAUAAGUUGAUAUAUGAAUGGCACCUUUUUGAGUAGGGUAAUGUACAAUGAGGACAACAUUUGUGGU
Get precursor sequence
Structure
        10          20        30        40        50        
CUGCCUUCGGCUUAUCUG--|  U  G                 C        CAUAAG 
                    UGU CA UGCCCUACUCAGGGAGG GUCAUUCA      U
                    ACA GU AUGGGAUGAGUUUUUCC CGGUAAGU      U
UGGUGUUUACAACAGGAGUA^  U  A                 A        AUAUAG 
      110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-506-P4_5p*
mirBase accessionMIMAT0034422
Sequence 
0- UACUCAGGGAGGCGUCAUUCACA -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-506
miRDB: MIMAT0034422
Mature sequence

Cfa-Mir-506-P4_3p
mirBase accessionNone
Sequence 
35- UGAAUGGCACCUUUUUGAGUAGG -58
Get sequence