MirGeneDB ID | Cgi-Mir-2001 |
Family name |
MIR-2001 (all species) |
Seed |
UUGUGAC |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cbr-Mir-2001
Cel-Mir-2001
Csc-Mir-2001
Cte-Mir-2001
Dan-Mir-2001
Dme-Mir-2001
Dmo-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Hme-Mir-2001
Isc-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Lpo-Mir-2001
Npo-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Sko-Mir-2001
Spu-Mir-2001
Xbo-Mir-2001
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (CGI_GCA_000297895.1) |
scaffold1366: 96730-96789 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUUUUUGUGACAUCGAUAAUCCUUCCUUUUUUGUGACCGUUAUAAUGGGCAUAACGUCUUAUGAAUGCUCGUUGUAUCGAUCAUCAAAAUGGAGGAAUAUGCACGACAGAGCACAAGGU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUUUUUGUGACAUCGAUAA---| U U U C U UAACGU
UCCU CC UUUU GUGA CG UAUAAUGGGCA C
AGGA GG AAAA UACU GC AUGUUGCUCGU U
UGGAACACGAGACAGCACGUAUA^ - U C A U AAGUAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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Mature sequence |
Cgi-Mir-2001_5p |
mirBase accession | None |
Sequence |
0- UUUGUGACCGUUAUAAUGGGCA -22
Get sequence
|
Star sequence |
Cgi-Mir-2001_3p* |
mirBase accession | None |
Sequence |
38- CUCGUUGUAUCGAUCAUCAAAA -60
Get sequence
|