| MirGeneDB ID | Cja-Mir-504-v2 |
|---|---|
| Family name | MIR-504 (all species) |
| Seed | ACCCUGG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-504-v1 |
| Orthologues | Bta-Mir-504-v2 Cfa-Mir-504-v2 Cpo-Mir-504-v2 Dno-Mir-504-v2 Eca-Mir-504-v2 Ete-Mir-504-v2 Hsa-Mir-504-v2 Laf-Mir-504 Mml-Mir-504-v2 Mmr-Mir-504-v2 Mmu-Mir-504-v2 Ocu-Mir-504-v2 Pab-Mir-504-v2 Rno-Mir-504-v2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 130839880-130839936 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGUCGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUAUUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCAUCGUAUGet precursor sequence |
| Structure | 10 20 30 40 50 AGUCGAAUGUUGAAUCAG- G - G A A-| UGUAU CU CUGU UGGGAGACCCUG UCUGC CUCU UC U GG GACA ACCCUUUGGGAC GGACG GAGG AG C UAUGCUACCAUCAGACACG A U G C GA^ UUAUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Cja-Mir-504-v2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GACCCUGGUCUGCACUCUAUC -21
Get sequence
|
| Star sequence | Cja-Mir-504-v2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- GGGAGCGCAGGGCAGGGUUUC -57
Get sequence
|
