MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-504-v1 
Orthologues Bta-Mir-504-v2  Cfa-Mir-504-v2  Cpo-Mir-504-v2  Dno-Mir-504-v2  Eca-Mir-504-v2  Ete-Mir-504-v2  Hsa-Mir-504-v2  Laf-Mir-504  Mml-Mir-504-v2  Mmr-Mir-504-v2  Mmu-Mir-504-v2  Ocu-Mir-504-v2  Pab-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021937.1: 130839880-130839936 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUAUUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCAUCGUAU
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Structure
        10         20         30        40         50       
AGUCGAAUGUUGAAUCAG-  G    -            G     A    A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGC CUCU  UC     U
                   GG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
UAUGCUACCAUCAGACACG  A    U            G     C    GA^ UUAUU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Cja-Mir-504-v2_5p (predicted)

mirBase accessionNone
Sequence
0- GACCCUGGUCUGCACUCUAUC -21
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Star sequence

Cja-Mir-504-v2_3p* (predicted)

mirBase accessionNone
Sequence
36- GGGAGCGCAGGGCAGGGUUUC -57
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