MirGeneDB ID | Ete-Mir-504-v2 |
Family name |
MIR-504 (all species) |
Seed |
ACCCUGG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-504-v1
|
Orthologues |
Bta-Mir-504
Cfa-Mir-504-v2
Cpo-Mir-504-v2
Dno-Mir-504-v2
Hsa-Mir-504-v2
Mml-Mir-504-v2
Mmu-Mir-504-v2
Ocu-Mir-504-v2
Rno-Mir-504-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980367: 6316014-6316070 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AGUAAAAUGCUGACGCUGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCUUACUGAGGGGAGAGCAGAGCAGGGUUUCCCAUACAGAGGGCACAGGCUGCUGCCCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUAAAAUGCUGACGCUG- G - G A A-| UGUAU
CU CUGU UGGGAGACCCUG UCUGC CUCU UC G
GG GACA ACCCUUUGGGAC AGACG GAGG AG C
UGUCCCGUCGUCGGACACG A U G A GG^ UCAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ete-Mir-504-v2_5p |
mirBase accession | None |
Sequence |
0- GACCCUGGUCUGCACUCUAUC -21
Get sequence
|
Star sequence |
Ete-Mir-504-v2_3p* (predicted) |
mirBase accession | None |
Sequence |
36- GGGAGAGCAGAGCAGGGUUUC -57
Get sequence
|