MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species Horse (Equus caballus)
MiRBase ID eca-mir-504
Paralogues Eca-Mir-504-v1 
Orthologues Bta-Mir-504-v2  Cfa-Mir-504-v2  Cja-Mir-504-v2  Cpo-Mir-504-v2  Dno-Mir-504-v2  Ete-Mir-504-v2  Hsa-Mir-504-v2  Laf-Mir-504  Mml-Mir-504-v2  Mmr-Mir-504-v2  Mmu-Mir-504-v2  Ocu-Mir-504-v2  Pab-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 114357349-114357405 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v2)		 Mir-504-v1 CM009179.1: 114357348-114357406 [-] UCSC Ensembl
Mir-504-v2 CM009179.1: 114357349-114357405 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGCAAUGUUGAAUCGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCGCAU
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Structure
        10         20         30        40         50       
AGUGCAAUGUUGAAUCGG-  G    -            G     A    A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                   GG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
UACGCCACCAUCGGACACG  A    U            G     C    GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Mature sequence

Eca-Mir-504-v2_5p
mirBase accessionMIMAT0013228
Sequence 
0- GACCCUGGUCUGCACUCUAUCU -22
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Star sequence

Eca-Mir-504-v2_3p* (predicted)
mirBase accessionNone
Sequence 
35- AGGGAGCGCAGGGCAGGGUUUC -57
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